| TMT | 61 | Death in the Family | Instant | | |
| TMT | 62 | Dream Beavers | Creature — Beaver Nightmare | | |
| TMT | 63 | Foot Mystic | Creature — Human Ninja Warlock | | |
| TMT | 64 | Insectoid Exterminator | Creature — Insect Mutant | | |
| TMT | 65 | Lord Dregg, Insect Invader | Legendary Creature — Insect Warrior | | |
| TMT | 66 | Madame Null, Power Broker | Legendary Creature — Demon Advisor | | |
| TMT | 67 | Ninja Teen | Enchantment — Class | | |
| TMT | 68 | Oroku Saki, Shredder Rising | Legendary Creature — Human Ninja | | |
| TMT | 69 | Pain 101 | Instant | | |
| TMT | 70 | Paramecia Coloniex | Creature — Zombie Worm | | |
| TMT | 71 | Rat King, Verminister | Legendary Creature — Rat Avatar | | |
| TMT | 72 | Savanti Romero, Time's Exile | Legendary Creature — Demon Wizard | | |
| TMT | 73 | Shark Shredder, Killer Clone | Legendary Creature — Shark Octopus Ninja | | |
| TMT | 74 | Shredder, Unrelenting | Legendary Creature — Human Ninja | | |
| TMT | 75 | Shredder's Armor | Artifact — Equipment | | |
| TMT | 76 | Shredder's Revenge | Sorcery | | |
| TMT | 77 | Shredder's Technique | Sorcery | | |
| TMT | 78 | South Wind Avatar | Creature — Snake Spirit Avatar | | |
| TMT | 79 | Splinter, Hamato Yoshi | Legendary Creature — Mutant Ninja Rat | | |
| TMT | 80 | Splinter's Technique | Sorcery | | |
| TMT | 81 | Squirrelanoids | Creature — Squirrel Mutant | | |
| TMT | 82 | Stomped by the Foot | Instant | | |
| TMT | 83 | Super Shredder | Legendary Creature — Mutant Ninja Human | | |
| TMT | 84 | Tunnel Rats | Creature — Rat | | |
| TMT | 85 | Bot Bashing Time | Sorcery | | |
| TMT | 86 | Broadcast Takeover | Sorcery | | |
| TMT | 87 | Casey Jones, Jury-Rig Justiciar | Legendary Creature — Human Berserker | | |
| TMT | 88 | Casey Jones, Vigilante | Legendary Creature — Human Berserker | | |
| TMT | 89 | Cool but Rude | Enchantment — Class | | |
| TMT | 90 | General Traag, Heart of Stone | Legendary Artifact Creature — Elemental Soldier | | |
| TMT | 91 | Hard-Won Jitte | Artifact — Equipment | | |
| TMT | 92 | Improvised Arsenal | Artifact — Equipment | | |
| TMT | 93 | Jennika's Technique | Instant | | |
| TMT | 94 | Manhole Missile | Instant | | |
| TMT | 95 | Mouser Attack! | Instant | | |
| TMT | 96 | Mouser Foundry | Artifact | | |
| TMT | 97 | Mutant Town Musicians | Creature — Mutant Bard Performer | | |
| TMT | 98 | Null Group Biological Assets | Creature — Mutant Mercenary | | |
| TMT | 99 | Old Hob, Alleycat Blues | Legendary Creature — Cat Mutant Rebel | | |
| TMT | 100 | Purple Dragon Punks | Creature — Human Rogue | | |
| TMT | 101 | Raphael, Most Attitude | Legendary Creature — Mutant Ninja Turtle | | |
| TMT | 102 | Raphael, Ninja Destroyer | Legendary Creature — Mutant Ninja Turtle | | |
| TMT | 103 | Raphael, the Nightwatcher | Legendary Creature — Mutant Ninja Turtle | | |
| TMT | 104 | Raphael, Tough Turtle | Legendary Creature — Mutant Ninja Turtle | | |
| TMT | 105 | Raphael's Technique | Instant | | |
| TMT | 106 | Ravenous Robots | Artifact Creature — Robot | | |
| TMT | 107 | Rock Soldiers | Artifact Creature — Elemental Soldier | | |
| TMT | 108 | Slash, Reptile Rampager | Legendary Creature — Mutant Berserker Turtle | | |
| TMT | 109 | Spicy Oatmeal Pizza | Artifact — Food | | |
| TMT | 110 | Wingnut, Bat on the Belfry | Legendary Creature — Bat Mutant | | |
| TMT | 111 | Zog, Triceraton Castaway | Legendary Creature — Dinosaur Soldier | | |
| TMT | 112 | Courier of Comestibles | Creature — Human Citizen | | |
| TMT | 113 | Cowabunga! | Sorcery | | |
| TMT | 114 | Frog Butler | Creature — Frog Spirit | | |
| TMT | 115 | Groundchuck & Dirtbag | Legendary Creature — Ox Mole Mutant | | |
| TMT | 116 | Guac & Marshmallow Pizza | Artifact — Food | | |
| TMT | 117 | Leatherhead, Swamp Stalker | Legendary Creature — Crocodile Mutant Rogue | | |
| TMT | 118 | Michelangelo, Game Master | Legendary Creature — Mutant Ninja Turtle | | |
| TMT | 119 | Michelangelo, Improviser | Legendary Creature — Mutant Ninja Turtle | | |
| TMT | 120 | Michelangelo, Mutant BFF | Legendary Creature — Mutant Ninja Turtle | | |